PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO88588
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 190aa    MW: 20702.2 Da    PI: 5.0869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO88588genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-191464155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a++ ++g
  OMO88588 14 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRG 64
              67*****999.**********8...557***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MEGKSGSSRG GLSSSYRGVR KRKWGKWVSE IREPGKKTRI WLGSFETPEM AAAAYDVAAL  60
HFRGREARLN FPELINCLPK PASSNADDIR MAAHEAALRI RTNAAAGSES GGGGGSCSNA  120
GSSSGLGPIT VRLSPTQIQA INESPLDSPK MWMQMSETLM MDESSMMFCN ENEEENLGWD  180
DMQNDPLWDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.18e-55ERF family protein