PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO88835

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 589aa MW: 66436.5 Da PI: 4.5704

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO88835	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.5e-52	9	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 l+pGfrFhPtdeelv +yLk+kv +k+ +++i+ +diy++ePwdLp k k+k+++ ewyfFs dkky +g+r+nrat++gyWk+tgkd+++ + ++++ OMO88835 9 LAPGFRFHPTDEELVRYYLKRKVLNKP--SFDAISVIDIYRSEPWDLPdKsKLKSRDLEWYFFSALDKKYGNGSRTNRATEKGYWKTTGKDRAIRH-RERV 106 579*********************9..3478**********95347777888***********************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLv++kgrap+ge+t+Wvmheyr+ OMO88835 107 VGMKKTLVYHKGRAPHGERTNWVMHEYRI 135 ***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MGRGSSTSLA PGFRFHPTDE ELVRYYLKRK VLNKPSFDAI SVIDIYRSEP WDLPDKSKLK 60 SRDLEWYFFS ALDKKYGNGS RTNRATEKGY WKTTGKDRAI RHRERVVGMK KTLVYHKGRA 120 PHGERTNWVM HEYRITDEEM QKAGIQLDAF VLCRVFQKSG SGPKNGEHYG APFVEEEWED 180 DETIFVPGQH AVAVDEDVAN DEAFVEVNDI DQKLDIGNPS ENAVLPLNFC HGESSNHVEH 240 SRELSEDHQT PAGNMPENAF LPANFYYGES SNQAEHSRDF NEDYQKPIFV HAAESDSRPH 300 HEHAFSSMPS NEIPAEEVPV KDEYVLEPIE NINNVDYNYF LNEPYLDVND YLPSNDGFYL 360 EANDLSNPID PESEYFDFEE YLTFDDADDQ PLALDSDPMV GNKIPVSDQE PLVQTHSNGG 420 TERVSHASEP MDQPGNSDAS CSHQELETTK YEPDAKYPFI KKPSQMLGSF PAPPAFASEF 480 PSKDVALKFN SAAQASSSVH VMAGMIRITN MNSSGTLLDW SYNKNGNVNI VLSFSLPQGD 540 VDSSSYLPMT NLLAGKTGSV VARGWFFLML FWVLIISVSL KFSTCICTR

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MGRGSSTSLA PGFRFHPTDE ELVRYYLKRK VLNKPSFDAI SVIDIYRSEP WDLPDKSKLK  60
SRDLEWYFFS ALDKKYGNGS RTNRATEKGY WKTTGKDRAI RHRERVVGMK KTLVYHKGRA  120
PHGERTNWVM HEYRITDEEM QKAGIQLDAF VLCRVFQKSG SGPKNGEHYG APFVEEEWED  180
DETIFVPGQH AVAVDEDVAN DEAFVEVNDI DQKLDIGNPS ENAVLPLNFC HGESSNHVEH  240
SRELSEDHQT PAGNMPENAF LPANFYYGES SNQAEHSRDF NEDYQKPIFV HAAESDSRPH  300
HEHAFSSMPS NEIPAEEVPV KDEYVLEPIE NINNVDYNYF LNEPYLDVND YLPSNDGFYL  360
EANDLSNPID PESEYFDFEE YLTFDDADDQ PLALDSDPMV GNKIPVSDQE PLVQTHSNGG  420
TERVSHASEP MDQPGNSDAS CSHQELETTK YEPDAKYPFI KKPSQMLGSF PAPPAFASEF  480
PSKDVALKFN SAAQASSSVH VMAGMIRITN MNSSGTLLDW SYNKNGNVNI VLSFSLPQGD  540
VDSSSYLPMT NLLAGKTGSV VARGWFFLML FWVLIISVSL KFSTCICTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-171	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO88835