PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO88939
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 182aa    MW: 19936 Da    PI: 6.8182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO88939genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-202878256
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
              +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+taeeAa+a++aa+++++g+
  OMO88939 28 RYRGVRKRP-WGRYAAEIRDPRK---KTRVWLGTFDTAEEAARAYDAAAREFRGA 78
              59*******.**********843...6*************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MKEKETMAPR SKPTPVNPIT DSTSKEIRYR GVRKRPWGRY AAEIRDPRKK TRVWLGTFDT  60
AEEAARAYDA AAREFRGAKA KTNFTDENNN DFTRSPSQSS TVESTSPPPL DLTLASAGFS  120
VPVTANRPVF FFDAFASAGS GSPQSCGAQS DSDSSSSVVD FEGGVQRRVF DLDLNLLPAE  180
ME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-21ERF family protein