PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO88951

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 180aa MW: 20313.4 Da PI: 9.1045

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO88951	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	138.6	1.7e-43	54	131	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C dls+ak+yhrrhkvCe+h+kapvv+vsgl+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk++a OMO88951 54 CCQVEKCGLDLSDAKRYHRRHKVCEIHAKAPVVVVSGLRQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKSTA 131 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MNNKGFMAED LDNDFEEDEE EGGGDHGYPD DEKKKRAYGK RGSSGGGGGV SPPCCQVEKC 60 GLDLSDAKRY HRRHKVCEIH AKAPVVVVSG LRQRFCQQCS RFHELSEFDE SKRSCRRRLA 120 GHNERRRKST AESSSAEGSS RKGLTSHSKE SHNYRQVDDQ RGRVPMQIPG NLSFKRSQIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	1e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO88951