PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO89105

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 283aa MW: 30832.6 Da PI: 5.4338

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO89105	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	52.8	9e-17	103	141	1	43
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtl 43 kpr+rWt+eLH++Fv+av+qL +AtPkt+l+lm+++gL + OMO89105 103 KPRVRWTHELHACFVDAVNQL----EATPKTVLDLMDIEGLGI 141 79*****************....9************976 PP
2	Myb_DNA-binding	26.5	1.5e-08	105	135	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 r rWT e++ +vdav+ql +kt+ m OMO89105 105 RVRWTHELHACFVDAVNQLEAT-PKTVLDLMD 135 78****************98.****997 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MAEIESEMKI VSTENNACDE FKRVAASGKE IVGQGACDVN VGLNAQVDNP EHQLQSGENN 60 SLLALQEIQG PSTPVKTNGA AGGNEVVEIV KEKPKLILTN DFKPRVRWTH ELHACFVDAV 120 NQLEATPKTV LDLMDIEGLG ISVSEIVGAS RGVSSLKSVS SRTNASRGRK AKQTAKSQEE 180 IDEKLHLRIE TQKHVQRCLE AQRRYLGMAL ERASKKLGDG YLGNAATENT ILHGQASGTL 240 AAISDVRTMA TIPEFYVNQQ NQYPTYDTLT PQANVSLQEG YEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	7e-17	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO89105