PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO89355

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 69aa MW: 7615.99 Da PI: 11.7632

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO89355	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	78.3	2.2e-24	20	67	1	48
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdskti 48 aa+k+ +++++hTkv+gR+RR+R++ +c ar+F+L++eLG+++d++ti OMO89355 20 AAPKRASTKDRHTKVEGRGRRIRMPTTCVARIFQLTRELGHKSDGETI 67 689********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence
MAAVHVPSAL PMPLVTLPPA APKRASTKDR HTKVEGRGRR IRMPTTCVAR IFQLTRELGH 60 KSDGETIRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	4e-27	TCP family protein

Link Out ? help Back to Top
Ensembl	OMO89355