PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO89592

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 873aa MW: 97284.4 Da PI: 4.869

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO89592	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.6e-09	811	864	1	46
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqk 46 +++WT+ E+e l+++vk++G+ W++I kgRt+ ++k++w++ OMO89592 811 KLPWTKTEEEMLKKGVKKFGSYgrsmPWTKILDFGTsvflKGRTAIDLKDKWRN 864 689***************88999**9876699*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MQKGFGLSNN GERVFLDLLG SVNSLSTAHI VLLARPRNPT LLVDSEDSYY GDYLTIYLRN 60 HFNLVELQAY YGVAGVIIIA SAFQAILGCS GLMSLFLRVF YYFSLLSDLI QEAPVISRNI 120 RGNTKEMLAL RCLEELFGAN NSLTNVAPPD SRVTFDLSLS CNDVLQQILR EVSIPKLKRA 180 CPELLRWDVH PFIMHKRASL PKCALEQLKD TILNEIHVLD GDKNGPKWWP DDSDDENSNQ 240 EGNLIPQVHE NDNEVLQDRL LEKTLTPSKR CGSDLIAANL VGAVNGNKDS ICNDLLVNAK 300 KFKQEATCTV QSFEQIPITL NGDEQLEDET ERSTKGTEME GDNMRKDSQA GEGEQISNAQ 360 NADIMVEQNV VMVVPSHVEN AVLQKSPSGD ANDFQVNAEK FKKDATCTVQ SFEQIPISLN 420 GDEQLDDETE RSTKVTEMEG DNTRKYSQAG EGNQMENAQN VDMMVEQTCG DRPFQNVVMV 480 VPSHVENAAL QKNPGSDAKE NFNQGFPLSC PISSSVDGLQ QNHVPVKANA DMEHPRAEQM 540 SEHEDERIDI ALEKSLFLSS QCTPSQDPLG KSGMTEQNFC VKCNKKGKVL YLEAKHMTSL 600 ARKEVAAFLE LCSKKLTLEP WKSTSHPRLN ADEDLVGTYE SGHLGQRECN FICQDRVVNH 660 GSSAACLNGD KLCLEKETFM VGVVHAQGEK NEEEEKMEPG QTGHEHQSMR EHEHQQDQLP 720 ANPKCSNDNL TGENTVPVPA NEVEVEEIAK EVVQPQDSDP PQVPASAVNS DGEESSTAAN 780 DKFIISAYPI RAKKHEPKYT SPPIPQLRRK KLPWTKTEEE MLKKGVKKFG SYGRSMPWTK 840 ILDFGTSVFL KGRTAIDLKD KWRNMSKVSP RCK

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MQKGFGLSNN GERVFLDLLG SVNSLSTAHI VLLARPRNPT LLVDSEDSYY GDYLTIYLRN  60
HFNLVELQAY YGVAGVIIIA SAFQAILGCS GLMSLFLRVF YYFSLLSDLI QEAPVISRNI  120
RGNTKEMLAL RCLEELFGAN NSLTNVAPPD SRVTFDLSLS CNDVLQQILR EVSIPKLKRA  180
CPELLRWDVH PFIMHKRASL PKCALEQLKD TILNEIHVLD GDKNGPKWWP DDSDDENSNQ  240
EGNLIPQVHE NDNEVLQDRL LEKTLTPSKR CGSDLIAANL VGAVNGNKDS ICNDLLVNAK  300
KFKQEATCTV QSFEQIPITL NGDEQLEDET ERSTKGTEME GDNMRKDSQA GEGEQISNAQ  360
NADIMVEQNV VMVVPSHVEN AVLQKSPSGD ANDFQVNAEK FKKDATCTVQ SFEQIPISLN  420
GDEQLDDETE RSTKVTEMEG DNTRKYSQAG EGNQMENAQN VDMMVEQTCG DRPFQNVVMV  480
VPSHVENAAL QKNPGSDAKE NFNQGFPLSC PISSSVDGLQ QNHVPVKANA DMEHPRAEQM  540
SEHEDERIDI ALEKSLFLSS QCTPSQDPLG KSGMTEQNFC VKCNKKGKVL YLEAKHMTSL  600
ARKEVAAFLE LCSKKLTLEP WKSTSHPRLN ADEDLVGTYE SGHLGQRECN FICQDRVVNH  660
GSSAACLNGD KLCLEKETFM VGVVHAQGEK NEEEEKMEPG QTGHEHQSMR EHEHQQDQLP  720
ANPKCSNDNL TGENTVPVPA NEVEVEEIAK EVVQPQDSDP PQVPASAVNS DGEESSTAAN  780
DKFIISAYPI RAKKHEPKYT SPPIPQLRRK KLPWTKTEEE MLKKGVKKFG SYGRSMPWTK  840
ILDFGTSVFL KGRTAIDLKD KWRNMSKVSP RCK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	4e-07	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMO89592