PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO89593
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 295aa    MW: 33545.3 Da    PI: 5.8828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO89593genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-202878155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  OMO89593 28 CQYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
              68*****999.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MESYRKSPLK PWKKGPTRGK GGPQNASCQY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYLNLPHLQQ PNSSNSNSNK LLHHKFKWVP SKNFISMFPS  120
SCGLLNLNAQ PSVHVIHQRL QELKKNGVFN PMTTSSSESK TDDSIQIITN DELTPAAEDN  180
QMKEKDVEVS SDKMAAGAYE DKPQIDLHEF LQQQGILREE KQSDKGVETT EQSLTATDSS  240
IKDYDEISAF AENNFNWDAM IEMHGVSDYQ FGAESSFQVH DFQEDPTFPT SIWNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-79ERF family protein