PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO89641

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 387aa MW: 40657.6 Da PI: 8.6528

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO89641	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.2	9.8e-37	81	187	2	90
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesssssasns 85 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt ++ssa+++ +++++++n+ OMO89641 81 TAKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTgtvpaiavsvggtlkipTTSSANAS---NNNNNTNNN 178 6899************************************************************4444444444444433322222222...111111111 PP TCP 86 ssg....ka 90 +++ k+ OMO89641 179 QIDenvtKK 187 111111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MDPDDDGGAS DLSTSAGEPN TAAGTAANNK DKNCNNSAFQ VMPLKEEPIE SDPDNKTRLS 60 PPIGAVQVPM QIQQMPMPVT TAKRSSTKDR HTKVEGRGRR IRIPATCAAR IFQLTRELGH 120 KSDGETVRWL LEHAEQAIIE ATGTGTVPAI AVSVGGTLKI PTTSSANASN NNNNTNNNQI 180 DENVTKKRKR PANSEFCDIN EGIPFAASQP QHQLMTQASG LAPVTPQGLV PVWAVGNTGM 240 MVPANAFWMI PQPTATAPVG NGLPNQQPSP QIWALSPSLT PVFNVAAAAR PISSFVATAN 300 QVQAVMCNGN LSTLAAVNTS STAVGATVAK KSTMAPSVSS GGNNNGSGST GGKAQMLRDF 360 SLEIYDKQEL QFMGRAGNHQ PLQASKQ

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MDPDDDGGAS DLSTSAGEPN TAAGTAANNK DKNCNNSAFQ VMPLKEEPIE SDPDNKTRLS  60
PPIGAVQVPM QIQQMPMPVT TAKRSSTKDR HTKVEGRGRR IRIPATCAAR IFQLTRELGH  120
KSDGETVRWL LEHAEQAIIE ATGTGTVPAI AVSVGGTLKI PTTSSANASN NNNNTNNNQI  180
DENVTKKRKR PANSEFCDIN EGIPFAASQP QHQLMTQASG LAPVTPQGLV PVWAVGNTGM  240
MVPANAFWMI PQPTATAPVG NGLPNQQPSP QIWALSPSLT PVFNVAAAAR PISSFVATAN  300
QVQAVMCNGN LSTLAAVNTS STAVGATVAK KSTMAPSVSS GGNNNGSGST GGKAQMLRDF  360
SLEIYDKQEL QFMGRAGNHQ PLQASKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	8e-63	TCP family protein

Link Out ? help Back to Top
Ensembl	OMO89641