PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO89669
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 216aa    MW: 24393.3 Da    PI: 5.0547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO89669genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.0003969903455
              TTS-STCHHHHHHHHHHHHHHH CS
       HLH 34 pskKlsKaeiLekAveYIksLq 55
              + +K s ++   +Av+YIk+Lq
  OMO89669 69 HEGKRSISDHMHEAVNYIKHLQ 90
              4789999**************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MASDDDPKFP ISEQNTDELF QFFSDPQQEQ KDEHDLTHHL SEDGNVAAVG KRKTAPGFGF  60
KQKGNIPSHE GKRSISDHMH EAVNYIKHLQ NRITELSDKR DELKRRSTIT LHKPKSLTEC  120
TEEEDSQVEV RACFVGVEVV IKTGLRRSLL LSKVLEVLFA EGLNVVSCVS TSNVNERMLH  180
TIISEVNDDQ GSIELSELQK KLTEVINENL DQCPVI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.13e-19bHLH family protein