PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO89694
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 225aa    MW: 25393.3 Da    PI: 10.1056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO89694genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-1258108355
               HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 h  +Er+RR+++ + +e+Lr+llP       ++K s  +   +Av+YIk+Lq
  OMO89694  58 IIHRDIERQRRQEMAKLYETLRSLLPVeY---LKGKRSLPDHMNEAVNYIKHLQ 108
               5699***********************77...9********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MISLIPNSSD HQDAINVLIS NISHIRNDSR QLRRKAAIAF GVNDIDDGKL NNNKRKKIIH  60
RDIERQRRQE MAKLYETLRS LLPVEYLKGK RSLPDHMNEA VNYIKHLQKK MLKLSEKRDE  120
LKKLSSNSYG SSSSALEISQ DSNSKGSSIM VRPCLAGVEV VISTSFQLSS VLQLIVAEGL  180
SVLTCISTKV NTERLIHTIV SEVNDGRSIE LCELQQKLRN ISPFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-41bHLH family protein