PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO89864

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 108aa MW: 12320.2 Da PI: 7.1301

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO89864	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	28.5	4.3e-09	50	77	54	81
DUF260 54 redamsslvyeAearardPvyGavgvil 81 ++a++sl++eA++r++dPvyG+v+v+ OMO89864 50 LKEAVESLYFEAQCRIEDPVYGCVKVFD 77 589*********************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence
MASASSTNKI INDNSQSIIE LKQWSRCILK HNVESKTLFM AANPQSIIEL KEAVESLYFE 60 AQCRIEDPVY GCVKVFDRFG YLNVREEEIN LLASIRGCGL NPFKSFRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-08	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO89864