PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO90095
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 218aa    MW: 24815.3 Da    PI: 5.2438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO90095genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-135799754
              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
       HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  OMO90095 57 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 99
              57*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MDQNIENIGD EYKNYWETKY FLENEEYSSW AIDEFSGYYD SSSPDGAASS AASKNIVSER  60
NRRKKLNERL FALRAVVPNI SKMDKASIIK DAIDYIQELH EQESRIQAEI MELETGKLKK  120
NPGFEYEQEL PVLLKSKKSK LDNIFDSGGS PTSPIEVLEL KVTHMAEKIV VVSITCSKRT  180
DTMVKLCEVF ESLKLKIITA NITAVSGRLL KTVFIERT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-72bHLH family protein