PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO90198
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 366aa    MW: 40227.4 Da    PI: 6.7543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO90198genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-14184230354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  OMO90198 184 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 230
               79*************************9.....8****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MGRQGAYMCG KKEEDQQGQG ECSEAIQFQN IQQELLIQQH QQIQMQQHNN DLFGATRGGG  60
GGLMFPHEVS PIQLPWSLPL PPVHSFNPTH THTHFNGNPA RDHDPNFLVP PPPSSYGALF  120
NRRAPPALQF AYDHGPSVPD HLRILSETLG PVVQPGSAPF GLQAELGKMT AQEIMDAKAL  180
AASKSHSEAE RRRRERINNH LAKLRSLLPS TTKTDKASLL AEVIQHVKEL KRQTSLIAET  240
SPVPTEMDEL TVDTSDEDGK FVIKASLCCE DRSDLLPDLI KTLKALRLKT LKAEITTLGG  300
RVKNVLFITG EEDSTAGGGD QQQYSITSIQ EALKAVMDKT SGDDSSSGSV KRQRTNITIL  360
EHRSLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-86bHLH family protein