PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO90199
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family TCP
Protein Properties Length: 368aa    MW: 40409.2 Da    PI: 9.7563
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO90199genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1471.3e-45962302135
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssaseceaesssssasnsssgkaaksaaksk 98 
               agkkdrhski+T+ g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k+ai elt++    + s++s +e++s+++s+s+ +++     +    
  OMO90199  96 AGKKDRHSKIYTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKAAIEELTDNlpggGKSASSTSESVSEVVSGSAAKENIIGVGSVA-- 194
               89****************************************************************975555545577788888886555533333332.. PP

       TCP  99 ksqksaasalnlakesrakarararertrekmriknk 135
                s k ++ ++ +a+esr karararert ek ++k+ 
  OMO90199 195 -SLKAKERKSRVARESRDKARARARERTIEKLKMKKA 230
               .222222336799*********************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MGVSPARRSS IAADKNSQAQ DPFWQFAALP FMDDDDDDGL LMSHLLSQAQ HQTHAPAEIN  60
PASPCPCPWP VKQSKKRKAS ATSNGGAKAK QPRKRAGKKD RHSKIYTAHG PRDRRMRLSL  120
QIARKFFDLQ DMLGFDKASK TIEWLFSKSK AAIEELTDNL PGGGKSASST SESVSEVVSG  180
SAAKENIIGV GSVASLKAKE RKSRVARESR DKARARARER TIEKLKMKKA SDPNESKPND  240
QLEPLQDAED QPHPHPHPHQ MDQDSAVSII EKFLGITRSS MFNYSHNIAD SSGENSEETN  300
CPGNWGINKI RYGYYTDIKE SKGKQNPSGN GQDQNPSSNL MMASSDPGSP SPTSIFSCAP  360
PTWLCIHK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17598KKRKASATSNGGAKAKQPRKRAGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-30TCP family protein