PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO90206

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 434aa MW: 49181.5 Da PI: 4.7351

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO90206	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.5	5.5e-32	54	193	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkatgkd 89 lp+G++F+P+d+e++++ L+k +++ ++++ i++ +i++++P++Lp vk++ + fF+++ k+y+tg+rk+r+++ + +W++tg++ OMO90206 54 LPRGVKFDPSDQEIIWHLLTKVGVDNSephpfINEFIPtIENDdGICYTHPQKLP-GVKQDGSVSLFFHRAIKAYNTGTRKRRKIHgddfgDVRWHKTGRT 153 799**********888888744444576653333333666546******.677788899**************86555555889*** PP NAM 90 kevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l OMO90206 154 KPVFL-DGVQRGCKKIMVLYmtMVKGGKPEKTNWVMHQYHL 193 *.99********6634677777*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MAGTWLVDGN RIATKIRSAS DPERVTWKSN PSRSCPSCHH VIDNSDVTQA WPGLPRGVKF 60 DPSDQEIIWH LLTKVGVDNS EPHPFINEFI PTIENDDGIC YTHPQKLPGV KQDGSVSLFF 120 HRAIKAYNTG TRKRRKIHGD DFGDVRWHKT GRTKPVFLDG VQRGCKKIMV LYMTMVKGGK 180 PEKTNWVMHQ YHLGTEEDEK DGEYVISKIF HQQQQTKQGD KVEQDLIEIT DTMIVKVDPV 240 TPMSVTPDPP RQGRQCQDFN KGQEYTITDK NSRVQISSPM HPTTQHEEDE VQRECESSSQ 300 NDLPDVENNL NQVLDSSNDN HAEEDPKWWD GESQYLLDSQ QLVEGLSLCD ELLQSQSPNR 360 DVSGVDGADD SKPRLSDYAQ LGAEHLKKDL EECQNLEGDL TNIELDTPPE FRLSQLEFGS 420 QDSFIAWGGS KLID

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MAGTWLVDGN RIATKIRSAS DPERVTWKSN PSRSCPSCHH VIDNSDVTQA WPGLPRGVKF  60
DPSDQEIIWH LLTKVGVDNS EPHPFINEFI PTIENDDGIC YTHPQKLPGV KQDGSVSLFF  120
HRAIKAYNTG TRKRRKIHGD DFGDVRWHKT GRTKPVFLDG VQRGCKKIMV LYMTMVKGGK  180
PEKTNWVMHQ YHLGTEEDEK DGEYVISKIF HQQQQTKQGD KVEQDLIEIT DTMIVKVDPV  240
TPMSVTPDPP RQGRQCQDFN KGQEYTITDK NSRVQISSPM HPTTQHEEDE VQRECESSSQ  300
NDLPDVENNL NQVLDSSNDN HAEEDPKWWD GESQYLLDSQ QLVEGLSLCD ELLQSQSPNR  360
DVSGVDGADD SKPRLSDYAQ LGAEHLKKDL EECQNLEGDL TNIELDTPPE FRLSQLEFGS  420
QDSFIAWGGS KLID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	0.0	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO90206