PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO90210
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family RAV
Protein Properties Length: 362aa    MW: 40256.4 Da    PI: 8.4337
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO90210genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.6e-1462110155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  OMO90210  62 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 110
               89****9888.8*********3.....5**********99*************98 PP
2B399.61.9e-31188288196
               EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
               f+k+ tpsdv+k++rlv+pk++ae++     g  ++++  l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++   e++l++ +
  OMO90210 188 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqsGTASAKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGPEKQLYIDW 288
               89***************************9977778999*************************************************8766777677766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MDGSCIDEST TSDSLSISIS PSNLPPAVTK SPDSLCRMGS GTSVIVDSEA GVEAESRKLP  60
SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAAKA YDIAAQRFRG RDAVTNFKES  120
EEDDIEMAFL NSHSKAEIVD MLRKHTYNDE LEQSRRSYGF DGNGKRVVRT DSGFGSFGLD  180
LKAREQLFEK AVTPSDVGKL NRLVIPKQHA EKYFPLQSGT ASAKGLLLNF EDVTGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VKEKNLKAGD IVSFQRSTGP EKQLYIDWKT RTGSGMGSVL  300
ENPVGPVQMV RLFGVNIFKI PCSTTSENVV GLGGCNGNGK RTREMELLEL ECSKKQKLID  360
AL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-154RAV family protein