PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO90265
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 358aa    MW: 39281.7 Da    PI: 4.3856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO90265genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-16125171252
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
               +  GVr++k +g+W+AeIr+p +   + r++lg+++t eeAaka++  +++
  OMO90265 125 KPVGVRQRK-WGKWAAEIRHPLK---KIRIWLGTYDTLEEAAKAYEDKKLE 171
               789*****9.**********743...5******************988876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MPEPRKQTMN PHKSFKKPKK IQPQPTMSEE EIQMTRKVRV IFHDPYATDS SSSEDESETP  60
VARKFQRGKR VIREIRVPAP DLPPLPKPLE SESSSQDSNS KTPSSRKRDL SKTLEGNAQP  120
VKTKKPVGVR QRKWGKWAAE IRHPLKKIRI WLGTYDTLEE AAKAYEDKKL EFDALVAAAD  180
ADAAAASSCD KINEVSCSAA ASHNSNSVPA ISEESESVLS HTSPSSVLEL DTSASVSVSK  240
SNDNVYCEDE DANKEGFDAN FANLPIPDFC FIDDPLLSGS VGQELNLDAE PADYLLVNDF  300
GLMLEDYCSI EDLSICGIEG DEPSELPDCD FGTDFGTDFG TGDFLFGEEV APLNIACP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.11e-38ERF family protein