PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO90649
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ZF-HD
Protein Properties Length: 183aa    MW: 20294.5 Da    PI: 8.003
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO90649genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.82.5e-28958557
  ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                  Y+eCl+NhAaslG++a+DGCgEf+ +   ++++++l+CaACgCHRnFHR+  
     OMO90649  9 LYRECLRNHAASLGSYATDGCGEFTLD---DTSPSTLQCAACGCHRNFHRKVI 58
                 7*************************8...6789****************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MEKEHPNDLY RECLRNHAAS LGSYATDGCG EFTLDDTSPS TLQCAACGCH RNFHRKVIYC  60
SSSRSRGDPE NTVELIEYGD GGGGGGSRRQ VVAESTEAAA ADRSGKKRFR TKFTVEQKEK  120
MLGFAEKLGW KLQRRDEEDE VEKFCRGIGV SRQVFKVWMH NHKNSSSASS LSTNCNASSL  180
TTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-40ZF-HD family protein