PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO91071

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 260aa MW: 29855.6 Da PI: 6.1246

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO91071	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	24	70	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT +d+l+ +a +++ + +W +Ia++++ g+++ ++k ++ ++ OMO91071 24 HWTRLDDKLFEQALVMFPEEtpdRWLKIAERVP-GKSPMEVKAHYEML 70 5***************99*********.*********877 PP
2	Myb_DNA-binding	26.8	1.2e-08	151	190	8	47
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 E l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky OMO91071 151 ENRLFLVGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKY 190 56789999*******************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MFQDDNNNIN IISHNPFLTQ PSTHWTRLDD KLFEQALVMF PEETPDRWLK IAERVPGKSP 60 MEVKAHYEML LYDVCEIEAG RVEVPSYADD SFSVLSSDFD NQISFEPSKP KHHGESERKK 120 GTPWTEDEHR SCLYIVELCD SNLELIFIDI ENRLFLVGLS KFGKGDWRSI SRNVVVTRTP 180 TQVASHAQKY FLRQSSVKKE RKRSSIHDIT TVDSNTMDVP VDQNWIHRPG APVTMHQFSP 240 SSHLPAQGGS LGYQNYGFPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	8e-73	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO91071