PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO91440

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 570aa MW: 61599.9 Da PI: 6.3516

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO91440	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.2	9.8e-16	344	390	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq OMO91440 344 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 390 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MEDDYPIPSS SSLTRSKKPP MAEDDIMELL WQNGQVVMQS QNHRSFKKLP TSPSKFHDAE 60 QSAPREIRSS SNNHHQQQQQ SVTDHLFMQE DEMASWLHYP LSEPNFDNDF CADLLYPSSS 120 IAAVAPCVTS TATTAAPAPP PLGSGRLSQL SASPSASVVA SASRPPVPPS RRNESESTRI 180 HNFLHFSRHK TARVEPSGPS NSKSVVRELT VIDSSDTPAM APESRASEAK PSTAEAASGG 240 NNNNACATLS AAAAASTPSA GVSVGASRDN LATCEVTVTS SPGGSSASAE PETQKAAPAE 300 DRKRKGRELD DGDCHSEDAE FASADTKKQT RGSTSTKRSR AAEVHNLSER RRRDRINEKM 360 RALQELIPRC NKSDKASMLD EAIEYLKSLQ LQVQMMSMGC GMVPMMFPGV QQYMPTMGMG 420 MGMGMGMDMG ISRPMMPFPN VLAGSALPTP AAAAHLGPRF PMPAFHMPPP VPTPDPSRIP 480 NNQSEAMLNP LGMQNPNQPQ LPTFADPYQQ YLGLHPMQLP PHQSRAMTQP GSNKPSTSRG 540 PENLENQPSE LKFYIDIEVN TVSSVNPNEE

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MEDDYPIPSS SSLTRSKKPP MAEDDIMELL WQNGQVVMQS QNHRSFKKLP TSPSKFHDAE  60
QSAPREIRSS SNNHHQQQQQ SVTDHLFMQE DEMASWLHYP LSEPNFDNDF CADLLYPSSS  120
IAAVAPCVTS TATTAAPAPP PLGSGRLSQL SASPSASVVA SASRPPVPPS RRNESESTRI  180
HNFLHFSRHK TARVEPSGPS NSKSVVRELT VIDSSDTPAM APESRASEAK PSTAEAASGG  240
NNNNACATLS AAAAASTPSA GVSVGASRDN LATCEVTVTS SPGGSSASAE PETQKAAPAE  300
DRKRKGRELD DGDCHSEDAE FASADTKKQT RGSTSTKRSR AAEVHNLSER RRRDRINEKM  360
RALQELIPRC NKSDKASMLD EAIEYLKSLQ LQVQMMSMGC GMVPMMFPGV QQYMPTMGMG  420
MGMGMGMDMG ISRPMMPFPN VLAGSALPTP AAAAHLGPRF PMPAFHMPPP VPTPDPSRIP  480
NNQSEAMLNP LGMQNPNQPQ LPTFADPYQQ YLGLHPMQLP PHQSRAMTQP GSNKPSTSRG  540
PENLENQPSE LKFYIDIEVN TVSSVNPNEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	349	354	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	2e-42	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO91440