PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO91506

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 368aa MW: 41291.6 Da PI: 5.4177

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO91506	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl OMO91506 14 KGPWSPEEDAKLKAYIEKYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.3	6.5e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ OMO91506 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR 120 RKQSNNNRFS ASNQDPNDQS NGADDNQFSQ GLSNSALERL QLHMQLQSLQ NPFSSFYNNP 180 AIWPKILPLQ EKMIQTIQAS DGNPNNLLMQ SQQGSDFYDH QQQQDYQKSS NSKGLDDQVD 240 NSLDGISPAD CSVHYGTGNN MVDSELVPKV ADDHGNHVGM AQSNAGVSNF QAELDELLNS 300 KTSGYAPVQQ EDQMTEFDCF KDMNGSKDSL IWWSNDFDAK SASSNSWDSN SVLQSNGMFQ 360 DYELGYHM

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
RKQSNNNRFS ASNQDPNDQS NGADDNQFSQ GLSNSALERL QLHMQLQSLQ NPFSSFYNNP  180
AIWPKILPLQ EKMIQTIQAS DGNPNNLLMQ SQQGSDFYDH QQQQDYQKSS NSKGLDDQVD  240
NSLDGISPAD CSVHYGTGNN MVDSELVPKV ADDHGNHVGM AQSNAGVSNF QAELDELLNS  300
KTSGYAPVQQ EDQMTEFDCF KDMNGSKDSL IWWSNDFDAK SASSNSWDSN SVLQSNGMFQ  360
DYELGYHM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-102	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO91506