PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO91774

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 250aa MW: 28284.7 Da PI: 6.5333

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO91774	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.2	1.7e-45	4	134	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 + GfrF Pt+eelv++yL++++egk+ ++ vi+ ++iy+vePwdLp+ +++++++w++F++r++++a+g r+nr+t+sgyWkatg+ v+s++++ OMO91774 4 TTGFRFFPTEEELVSFYLRNQLEGKRQGINLVIPVLNIYDVEPWDLPSlageLCRKDTEQWFYFTPRQEREARGGRPNRTTASGYWKATGSPSYVYSSDDR 104 68**********************999888***********546654455777************************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+kkt+vfykg+ap+g+kt+W m+eyr+ OMO91774 105 VIGMKKTMVFYKGKAPSGKKTKWKMNEYRA 134 **************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MEVTTGFRFF PTEEELVSFY LRNQLEGKRQ GINLVIPVLN IYDVEPWDLP SLAGELCRKD 60 TEQWFYFTPR QEREARGGRP NRTTASGYWK ATGSPSYVYS SDDRVIGMKK TMVFYKGKAP 120 SGKKTKWKMN EYRAIEAVAN PSAAATPKLR HEFSLCRIYV VSGSFRAFDR RPLEAVSRGT 180 QLHDNKAATS SQRITTMEKT SSPGTSHSGG DHSDLPEASE DDIWEMVNDL EEPPLGWELP 240 AQTEWSNIGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	2e-95	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO91774