PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO91847
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 143aa    MW: 16017.4 Da    PI: 9.5148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO91847genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.2e-0633721054
              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
              + R ++i +++  L++l+ +      +K + a++L +A+eYI+ L
  OMO91847 33 KDRKEKISERIVALQQLVSPY-----GKTDTASVLLEAMEYIRFL 72
              88999**************99.....9****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MMENKRSPCS VDHSNFTTMA SKRQKADLSI SAKDRKEKIS ERIVALQQLV SPYGKTDTAS  60
VLLEAMEYIR FLHEQVKVLS APYLQNTPTN NMQDVEHYSL RNRGLCLVPI SCTVGVARSN  120
GADIWAPIKT TSPKFDKAIS PFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.33e-65bHLH family protein