PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO91856
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 681aa    MW: 74936 Da    PI: 6.638
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO91856genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24121222199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +++ l+v
  OMO91856 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGDLCV 217
               89****************************985444444..8999*********************************************..4488999** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  OMO91856 218 GIRRA 222
               **997 PP
2Auxin_resp112.34.7e-37282365183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa++a+++++FevvY+Prast++F+vk+++v++a+++++ +GmRfkmafetedss++++ +Gt ++v+ +d++rWpnS+Wr+L+
    OMO91856 282 AATRAANGQPFEVVYYPRASTPDFCVKASSVRAAMQIQWYPGMRFKMAFETEDSSRISWfMGTTSSVQVVDSIRWPNSPWRLLQ 365
                 78999*****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    
MITVMDSRKE LMKNSEKCLD PQLWHACAGG MVQMPSVNSK VFYFPQGHAE HANGNVDFGN  60
LPIPPLILCR ISAVKFLADP ETDEVYSKLM LVPLRENDYG FEDEAFGVQN GMENSEKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT  180
PRRHLLTTGW SNFVNQKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGSGH EYPSGWNSGS  240
ASSGSQFGGY SPFLRDDESK LMRKDSNGDS TGRIKAESVI EAATRAANGQ PFEVVYYPRA  300
STPDFCVKAS SVRAAMQIQW YPGMRFKMAF ETEDSSRISW FMGTTSSVQV VDSIRWPNSP  360
WRLLQVAWDE PDLLHNVKRV SPWLVELVSN IPAMHLNPFS PPRKKMRLPQ HPDFSLLSQI  420
PMPSFSGNSL RSSSPICCIT DNIPGGIQGA RHAPYGLSSS DLHSNKLQSG LFPFGFQQLD  480
HTAPLTRISS DNSCSDNGNN KNTSCLLTIG NPTQSSKESN QVKTPHILLF GQLISSEQQS  540
SQSCSGDTVG NSSSDGNTEK TAISSDGSGS ANARENSSDE GSPWRKEHHK IDLGLETGHC  600
KVFMESENVG RTLDLSVLGS YEELHGKLAS MFGIESSEML NSVLYRDATG SMKHTGDEPF  660
SEFLKTARRL TILTDSSSDN I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein