PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO91873
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 274aa    MW: 31336.7 Da    PI: 9.4889
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO91873genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-102670345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+eE +++  a + +G +   +W++Ia++++ g++  +++  + 
         OMO91873 26 YWTKEENKRFESALAIYGEDvpdRWRRIAAMIP-GKSVDDVIKQYK 70
                     5********************************.****99998886 PP
2Myb_DNA-binding40.94.7e-13123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
         OMO91873 123 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 167
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
METLYATSFM SNSDWFDDQE NNNSTYWTKE ENKRFESALA IYGEDVPDRW RRIAAMIPGK  60
SVDDVIKQYK ELVEDVFDIE AGRVPIPGYL SSSPFSLGHD FDAYRKRPAA SRNPDQERKK  120
GVPWTEEEHR RFLMGLLKYG KGDWRNISRN FVVSKTPTQV ASHAQKYYQR QLSGGKDKRR  180
PSIHDITTVN LTNTAFSDNK PPSVNQSNLL ALQQKLACMS KVGHNWNHNS NNHDGSTHGN  240
WFTSSQYQTA SNGLRLQGQN LYGSAYIKPQ SSVF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.12e-97MYB family protein