PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO91967
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 246aa    MW: 26405.2 Da    PI: 6.4537
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO91967genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10856347
                     SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                      W++eE++ + +a++++  +     +W++Ia++++  ++ +++k ++q +
         OMO91967  8 TWSKEEEKAFENAIAMHWIEeesneQWEKIASMVP-SKSVEELKQHYQLL 56
                     6****************99999*************.***********965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MAAAGIVTWS KEEEKAFENA IAMHWIEEES NEQWEKIASM VPSKSVEELK QHYQLLVEDV  60
DAIEAGQVPL PSYTGEDPTS SAKDFHGFSG TSSSDKRSNS GYGNGFSGLN HDSNGHGGKG  120
SSRSDQERRK GIPWTEEEHR DRRRSSIHDI TSVNNGETSH QAPITGQHTS TNPSGAAAMG  180
PSVKHRAQPH MPGLGMYGAP VGRPVAAPGH MASAVGTPVM LPPGHHPPPP YIVPVAYPMA  240
PPPMHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-47MYB family protein