PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO92596
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 113aa    MW: 13010.9 Da    PI: 11.0056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO92596genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-194392255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  OMO92596 43 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 92
              899******.7*********32...35**********************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    
MEIQFQQQNQ QQQKLYQKSS NIPVISKGSK FKGKNKNNNK VNKFVGVRQR PSGRWVAEIK  60
DTTQKIRMWL GTFETAEEAA RAYDEAACLL RGSNTRTNFI TQGLIGFFIH KKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-21ERF family protein