PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO92601
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 283aa    MW: 32231.9 Da    PI: 5.9798
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO92601genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G  +W+  +r  g+ R++k+c++rw +yl
         OMO92601 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding57.92.4e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eE+e +v+++++lG++ W++Ia+ ++ gRt++++k++w++ 
         OMO92601  67 RGNYTKEEEETIVRLHEELGNR-WSAIAAQLP-GRTDNEIKNHWHTT 111
                      899*******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MVRTPSCDKS GLRKGTWTPE EDRKLIAYVT RYGCWNWRQL PRFAGLARCG KSCRLRWMNY  60
LRPNLKRGNY TKEEEETIVR LHEELGNRWS AIAAQLPGRT DNEIKNHWHT TLKKRFNHKS  120
STGTKDAKNN SSDHPIKRVT SKEKEFETNL KNLLINPPSP PLILESSLSA SLLSPQQPAS  180
SDQSQNSSIT TDNTAVSSSV SYNNNNNNHN SDIDMALFEA YEANSGSFWT EPFFSDDLFM  240
SSDISVPMMD LTNFEAQFPV LDGDEEILCP SGFYDEFEGL LNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-59MYB family protein