PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO92656
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 91aa    MW: 10344.6 Da    PI: 8.5399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO92656genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-0919591454
              HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
       HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
              d+iN+   +L++llP+   + +s K+s a +L+++++YI+sL
  OMO92656 19 DQINDLVTKLQQLLPEiH-NRHSDKVSAARVLQETCNYIRSL 59
              79**************66.89*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    
MSSRRSRSRQ SGGSRITDDQ INDLVTKLQQ LLPEIHNRHS DKVSAARVLQ ETCNYIRSLH  60
REVDDLSERL SELLATSDNA QAAIIRSLLM Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.11e-38bHLH family protein