PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93151
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25918.7 Da    PI: 9.4227
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93151genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.25e-191050242
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              +i n+s r+ tf kR++g++KK +ELS+LCd+e++ ii+s+
  OMO93151 10 FITNDSARKATFKKRKKGLMKKVSELSTLCDIEACAIIYSP 50
              89**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCD IEACAIIYSP YDSQPEAWPS  60
PAGVQHVLSK FRDLSEMEQT KKMMNQESFL RQRITKANEQ LKKQCKENRE KEMTQVMYQS  120
LTGKGLHNLN MADLNDLGWL IDHSLKDISK RIDELNKGSN SQGFSAAAAA VAMVPPEAVT  180
KSGENLQVER PGPQTNVDTM QRIMDMINPQ EHVGFGGFTD DALNFNAFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-63M-type_MADS family protein