PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93189
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 402aa    MW: 44765.9 Da    PI: 5.3193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93189genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding248.8e-0820501446
                     HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +a k +G++ W+ Ia+ +  gRt++ +k+r+ +
         OMO93189 20 QAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 50
                     79999****.*********.**********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    
MHVKRLLNVD YQLMTCCDLQ AQKIFGNRWT EIAKVVSGRT DNAVKNRFST LCKKRAKYEA  60
LAKENTTTCI NPNNKRILLQ NGFNPDGTTE CTVPAKRMRS ISDLTENCNF GDRAHRISGT  120
IINQQLRHPF AVLGQNLHNT NNVVLQSQVN NVKEVSTDAQ NDRSQGTFLK KDDPKITALM  180
QQAELLSSLA LKVNTDNTEQ SLENAWKVLQ DFLNQSKEND IFRYSISDID FQLEDFKDLL  240
EDLRSCNEGS RPSWRQPDLY EASPASSDYS TGSTLMPNSA GERGEENQAK IDAQQDILSS  300
YIEEQNCGNE QETGALSSEI IPSCDDQTNI VVASASSSAE FSSPIQVTPL FRSLAAGIPS  360
PKFSESERNF LLKTLGMESP SPNPGNNHSQ PPPCKRVLLH SL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.21e-130MYB family protein