PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93218
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24481.1 Da    PI: 9.5629
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93218genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73.2e-181150342
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              i n+s r+ tf kR++g++KK +ELS+LCd++++ ii+s+
  OMO93218 11 IANDSARKATFKKRKKGLMKKMSELSTLCDIKACAIIYSP 50
              89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MTRKKVKLAY IANDSARKAT FKKRKKGLMK KMSELSTLCD IKACAIIYSP YDSQPEAWPS  60
PAGVQHVLSK FRGLSEMEQT KKMMNQESFL RQRINKANEQ LKKQCKENRE KEMTQVMYQN  120
LSGEFGLQNL MNMADLNDLG YMIDMNLKDI NKRVESLAKM GSHDNSQGSP AAEPEANSGS  180
QQFINLLQGN IGFGIGGDEM MNFFASDSNW SNGPLFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYIANDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-65M-type_MADS family protein