PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO93220

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 461aa MW: 50867.2 Da PI: 6.5086

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO93220	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.2e-16	132	177	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ OMO93220 132 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 177 899***************************.*********996 PP
2	Myb_DNA-binding	58	2.2e-18	184	227	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l++a++++G++ W+ Iar ++ gRt++ +k++++ OMO93220 184 RRAFTEEEEERLIQAHHLYGNK-WAMIARLFP-GRTDNAVKNHYHV 227 678*****************.*****.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MGSLSLGPNF SLVASSVISS SQDSYGCNKP VGSSDILEIN ANERASSSPS WGFHHFMGNC 60 NKTRSFEENH SSDNNVEEGK ASSDCSDGFG DNNNNSRNIN LNASLNSEEN PNENVLSGKE 120 TDSSGQSKLC ARGHWRPAED TKLKELVALY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP 180 RINRRAFTEE EEERLIQAHH LYGNKWAMIA RLFPGRTDNA VKNHYHVIMA RKCREQSTAY 240 RRRKLSQSVY RRMEETPTNM KADQHQPAAA AAAAVSSPYC LNIPNRRLGI ISQYQFGISF 300 NNDVNGGVDD VSVPNNMISR REAISSNEVP LNNGFCSPFE FFPAGLKSND MMNMLSQTSS 360 WGTRPIDEHP QISGFFPQQQ QEQNPCCSSS SSSYIMAMQQ SEFFRSQSLT DSTASTITPP 420 QVSGSEPSSS MAVMSRTAAA AASSYETIPP PFIDFLGVGA T

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MGSLSLGPNF SLVASSVISS SQDSYGCNKP VGSSDILEIN ANERASSSPS WGFHHFMGNC  60
NKTRSFEENH SSDNNVEEGK ASSDCSDGFG DNNNNSRNIN LNASLNSEEN PNENVLSGKE  120
TDSSGQSKLC ARGHWRPAED TKLKELVALY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP  180
RINRRAFTEE EEERLIQAHH LYGNKWAMIA RLFPGRTDNA VKNHYHVIMA RKCREQSTAY  240
RRRKLSQSVY RRMEETPTNM KADQHQPAAA AAAAVSSPYC LNIPNRRLGI ISQYQFGISF  300
NNDVNGGVDD VSVPNNMISR REAISSNEVP LNNGFCSPFE FFPAGLKSND MMNMLSQTSS  360
WGTRPIDEHP QISGFFPQQQ QEQNPCCSSS SSSYIMAMQQ SEFFRSQSLT DSTASTITPP  420
QVSGSEPSSS MAVMSRTAAA AASSYETIPP PFIDFLGVGA T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	4e-73	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO93220