PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO93223

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 867aa MW: 95397.9 Da PI: 6.9692

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO93223	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	19	73	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFvea++qLGG++kAtPk+++++m++ gLtl+h+kSHLQk+Rl OMO93223 19 KPRLKWTPELHQRFVEAINQLGGADKATPKSLMRVMGISGLTLYHLKSHLQKFRL 73 79****************************************************8 PP
2	Myb_DNA-binding	57.3	3.5e-18	21	72	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT+e+++++v+a++qlGg t+k+ +r mg g+tl+++ks++qk++ OMO93223 21 RLKWTPELHQRFVEAINQLGGAdkaTPKSLMRVMGiSGLTLYHLKSHLQKFR 72 89****************99**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence
MGLQQNHQNM SLVLSTDAKP RLKWTPELHQ RFVEAINQLG GADKATPKSL MRVMGISGLT 60 LYHLKSHLQK FRLGKSQQTE ICLSNNNKQD DSREIQSNDE DFSSDHTSDG TQKQMNESLQ 120 IAQALQMQME VQRKLHEQIE VQRHLQLRIE AQGKYLQTVL KKAQETLAGY TSSSVGVELA 180 KAELSQLVSM VNTGCTSSSF SELTELGGSS LKENERKPMR GTLCSMESSL TSSESSGRKE 240 QEQIPINENS NPCVELSLMD IHPENKTFLS GSSNIQANGK KRSVSNISDG ICVEQPLGKR 300 SQNPKEETGD LLRKSGLFGL FDLNSQCQSE IDSGWKNCLL KAFIFLLIDL SSCFPSEPQP 360 QGELPYMTSD AKEIAGKSFD YIIVGGGTAG CPLAATLSEK FSVLLIERGG SPYGNPLVVD 420 KRFYGFSLIQ TDEFSSVAHD FVSTDGVRNT RGRVLGGSTA INGGFYSRAS EDFIKNAGWD 480 KELVKDAYAW VESRIVFTPE LTPWQTVVEF ALLEAGILPY NGYSLDHVEG TKIGGSIFDI 540 WGTRHTSADL LKAANPKNLV VLLNATVKNI LFHSNGNETE TTVKGIRFIK SDGNTDQTYS 600 AYLNQPKNST SVGDVILSAG AVGSPQILLL SGIGPRKHLE NFDIPHVLNL KGVGKGMKDN 660 PCISVLVDTD PQSRQPEPPQ VTGIAKDYKF IVEGGIIPIS FNATRMPIAA KIAFPVSEGK 720 LRLNSTDPRR NPSVKFNYLA EEEDLNNCAK MVKLLERVAK SNSVAFYLGF KHQDKLMASN 780 DDERKFCKEN VRTYYHYHGG CIVGSVVDND YKVYGVKGLR VVDGSTFPES PGTNPMATLL 840 MLGRYQGLKI MKEREQSSSS SSSQQNP

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence

MGLQQNHQNM SLVLSTDAKP RLKWTPELHQ RFVEAINQLG GADKATPKSL MRVMGISGLT  60
LYHLKSHLQK FRLGKSQQTE ICLSNNNKQD DSREIQSNDE DFSSDHTSDG TQKQMNESLQ  120
IAQALQMQME VQRKLHEQIE VQRHLQLRIE AQGKYLQTVL KKAQETLAGY TSSSVGVELA  180
KAELSQLVSM VNTGCTSSSF SELTELGGSS LKENERKPMR GTLCSMESSL TSSESSGRKE  240
QEQIPINENS NPCVELSLMD IHPENKTFLS GSSNIQANGK KRSVSNISDG ICVEQPLGKR  300
SQNPKEETGD LLRKSGLFGL FDLNSQCQSE IDSGWKNCLL KAFIFLLIDL SSCFPSEPQP  360
QGELPYMTSD AKEIAGKSFD YIIVGGGTAG CPLAATLSEK FSVLLIERGG SPYGNPLVVD  420
KRFYGFSLIQ TDEFSSVAHD FVSTDGVRNT RGRVLGGSTA INGGFYSRAS EDFIKNAGWD  480
KELVKDAYAW VESRIVFTPE LTPWQTVVEF ALLEAGILPY NGYSLDHVEG TKIGGSIFDI  540
WGTRHTSADL LKAANPKNLV VLLNATVKNI LFHSNGNETE TTVKGIRFIK SDGNTDQTYS  600
AYLNQPKNST SVGDVILSAG AVGSPQILLL SGIGPRKHLE NFDIPHVLNL KGVGKGMKDN  660
PCISVLVDTD PQSRQPEPPQ VTGIAKDYKF IVEGGIIPIS FNATRMPIAA KIAFPVSEGK  720
LRLNSTDPRR NPSVKFNYLA EEEDLNNCAK MVKLLERVAK SNSVAFYLGF KHQDKLMASN  780
DDERKFCKEN VRTYYHYHGG CIVGSVVDND YKVYGVKGLR VVDGSTFPES PGTNPMATLL  840
MLGRYQGLKI MKEREQSSSS SSSQQNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-81	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO93223