PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93269
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 229aa    MW: 25394.6 Da    PI: 6.8801
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93269genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-093262347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia++++ +Rt++++k++w+++
         OMO93269  3 RWSAIAAHLP-KRTDNEIKNYWNTH 26
                     4*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSRWSAIAAH LPKRTDNEIK NYWNTHIKKR FTKMGIDPTT HKPISDLLSS AAGGGSNTGT  60
LSHMAQWERA RLEAEARLVK GSKKLVPNKP SLQMKRSKAL AAAPPSRSEC LDVLKAWQSV  120
VAGMFGINNT YNNLEPQPPP PTTMFLGNPI DLTAVACSNM GGTGEFMSDD KPNQNLPELN  180
ERFDNSMCLH DTTYQNWTAS AAGNNNMVED FWDISVHDFD YPMEEGNSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.15e-30MYB family protein