PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93524
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family YABBY
Protein Properties Length: 189aa    MW: 20510.3 Da    PI: 8.4021
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93524genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY148.37.3e-46121582163
     YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102
               d++ ++e++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++ +   q          +  ++   ++  + +++    +k+ ++s+s s    s
  OMO93524  12 DLVPQTEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQG---------QCLDP---QTSLTLQSFCGDSKKTGAQSSSPS---SS 97 
               78899*************************************9855333333222.........22222...222223333333333333333333...36 PP

     YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
               ++++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  OMO93524  98 TSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 158
               6778899****************************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MNLEEKATAG MDLVPQTEHL CYVRCNFCNT VLAVGIPCKR LLDTVTVKCG HCSNLSFLST  60
RPPLQGQCLD PQTSLTLQSF CGDSKKTGAQ SSSPSSSTSS EPSSPKAPFV VKPPEKKHRL  120
PSAYNRFMKE EIQRIKAANP EIPHREAFSA AAKNWARYIP NSPAASVSGS SSNVFILGFE  180
SDFAGIKEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-68YABBY family protein