PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO93654

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 561aa MW: 60122.6 Da PI: 5.0838

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO93654	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	376	424	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq OMO93654 376 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 424 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MDIGEKDKYE LERRNENHMN YQAPGMSSDW QFGGANLTST SMNLVPSDNP MAIGSTCASA 60 SVVDSFGSNL WEHPSNSQNL GFCDINAHNG PSSSNAMGIG KAGPNPLRNS IDRPFDMGWN 120 AASAMLKGGI LLPSPAGILP QSLSQLPADS AFIERAARFS SFNGGNFGDM VNPFGIPDSM 180 GLYTRGIGMM QSPQDILAIS GMKSVSGGVE SQRSKLNAVE ASREASLQVE NRAAQESPLK 240 NERRSESLVR SNEEAKQGTG GSGNESDEAE FSGGGGGGQD EPSPMDGTGG EPSAKGLSSK 300 KRKRSVQDTE VGQAKGGQPP VEAAKDNTED QQKGDQNQTT TTNKSTGKQG KQGSQASDPP 360 KEEYIHVRAR RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCSKVTGKA VMLDEIINYV 420 QSLQRQVEFL SMKLATVNPR LDFNIEGILG KDIIQTRAGP SSTLGFSPDM SVVYPPLHPS 480 QPGLVQAGLP VMGNTSDVIR RTLSSQFTPM TGGFKEPNQL SNAWEDELHN VVQMNYGTAA 540 PSDSQDVNDG SEKYFVQFSE M

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MDIGEKDKYE LERRNENHMN YQAPGMSSDW QFGGANLTST SMNLVPSDNP MAIGSTCASA  60
SVVDSFGSNL WEHPSNSQNL GFCDINAHNG PSSSNAMGIG KAGPNPLRNS IDRPFDMGWN  120
AASAMLKGGI LLPSPAGILP QSLSQLPADS AFIERAARFS SFNGGNFGDM VNPFGIPDSM  180
GLYTRGIGMM QSPQDILAIS GMKSVSGGVE SQRSKLNAVE ASREASLQVE NRAAQESPLK  240
NERRSESLVR SNEEAKQGTG GSGNESDEAE FSGGGGGGQD EPSPMDGTGG EPSAKGLSSK  300
KRKRSVQDTE VGQAKGGQPP VEAAKDNTED QQKGDQNQTT TTNKSTGKQG KQGSQASDPP  360
KEEYIHVRAR RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCSKVTGKA VMLDEIINYV  420
QSLQRQVEFL SMKLATVNPR LDFNIEGILG KDIIQTRAGP SSTLGFSPDM SVVYPPLHPS  480
QPGLVQAGLP VMGNTSDVIR RTLSSQFTPM TGGFKEPNQL SNAWEDELHN VVQMNYGTAA  540
PSDSQDVNDG SEKYFVQFSE M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	305	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-139	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO93654