PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93916
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22251 Da    PI: 6.1557
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93916genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF611.4e-19250149
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              k ien+  r +tfskRr gi KKA+EL +LC+ae+a ++fs+ gk + +
  OMO93916  2 KTIENEDDRLITFSKRRSGIYKKASELTTLCGAEIAFVVFSPAGKAFSF 50
              68******************************************97766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MKTIENEDDR LITFSKRRSG IYKKASELTT LCGAEIAFVV FSPAGKAFSF GHPSVESVAN  60
RFLNQNPPPN DNTHPLVEAH RKVRINHLTQ QHNELLNQLD AEKERAKALE LVTGGKGSDG  120
WWETPVDQLK QQDLHDSFSK FAELRNEVVS KLNDKGAAAA PLINGPMDPA QLMANPFDHV  180
NANEEVVPAV FAAPAPGYGP GCQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-35M-type_MADS family protein