PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO94061
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 259aa    MW: 29701.6 Da    PI: 8.3713
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO94061genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.3e-15131221198
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
               f+k +++s+++   +l lp  f++++  k+ e+  +tl de+g+++   +  +k++    l++GW++F  +++L +gD +vF+l+  +ef  +v ++r
  OMO94061 131 FVKPMLHSHTTGGFWLGLPGYFCRTYLPKH-EKSIITLVDEEGEEFPTIYLLEKTG----LSGGWRGFSIDHNLVDGDALVFQLVAPTEF--KVYIIR 221
               89************************4444.4459***************888887....***********************9986777..888877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MVESKLTYEA MRKRRMEENK KRMEELNLKT LSQALNKASP KLSPQGKKPR TPRIAVDVTA  60
VRRSGRVADK PKPNYKDVPL EPLERPRRGY SYSRRNLLNR VDASDEERAY SIEKAQHLES  120
NLESESDFPT FVKPMLHSHT TGGFWLGLPG YFCRTYLPKH EKSIITLVDE EGEEFPTIYL  180
LEKTGLSGGW RGFSIDHNLV DGDALVFQLV APTEFKVYII RAYESDDKED DNGEDDDKKP  240
DAKPDVQVLD RSAKRIRAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11116MRKRRM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-64B3 family protein