PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO94198

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 1762aa MW: 202248 Da PI: 8.3852

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO94198	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	1387	1409	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H OMO94198 1387 YICEVCHKGFQRDQNLQLHRRGH 1409 89******************988 PP
2	zf-C2H2	11.1	0.0012	1463	1485	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + OMO94198 1463 WKCDKCSKRYAVQSDWKAHTKIC 1485 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1762 aa Download sequence
MTSGSGSEAG LPKPVDDALR ALEQRWDQRF HEQDVRQRRF ETLLETILER LDTLGIDANN 60 RYDYDRENSD FRLKVDIPNF NGCLGIEEFM DWIAEVDRFF NYLDTPAEKR VKLVACRLKG 120 GASAWWDRLQ SRRVRKGKNL VRTWYRMKFL LQQEFLPPDY EQILFQAYQN LKQGAKSVHE 180 YTADFMRGRI GVQVVRTLSE VKNLVLKAEL MQQERSRRNY DNYRDDGSDD KDKKELTDRK 240 FNNNNRQNYR EEKAVGKRVV AEGGDNKKGD NNPYAKFHGV TCYRYEDDEE DDYDEDDKQI 300 YVVRRMMLTP KSETQTQRHQ LFKTRCTING KVFRLIIDSG SYENIISKEA VRKLNLPVEK 360 HPTPYSLWWI KSESRQLDVT KCCKVPFSIG KYKDEVYCDV VDMDVCQFLL GRPWQYDLDV 420 LHSGKSNQYR FEKNGEKFLL LPMQKSDKSK EQKTFLSVAK DFGSEMKESN ELYALVVKQQ 480 VELQVEEHPD LVQPLLLEFK DIMPDDIPDG LPPMRDIQHH INLIPGARLP NMPHYRMNPK 540 ESEILKEKVE ELLKKGLIRE SMSPCAVPAL LTPKKDGSWR MCVDSSAINR ITVGYKFPIP 600 RPDDMLDRLT GSAWFSKFDL KNGYHQIRIR PGDEWKTAFK TKEGLFEWLV MSFGLSNAPS 660 TFMRLMNQVL KPFPGQFVVV YFDDILIYSN SEEEHLAHLR QVLEVLQQNK LYVNLKKCNF 720 LTRQLLFLGF VVSADGVQVD ESKILAIKDW PEPKNVSELR SFHGLATFYR SFVTLKEKLY 780 TAPVLALPDF DKVFKVDCDA SGVGIGAVLS QEKRPVAFFS EKLSDSTRKW STYDKEFYYV 840 VRALKTWEHY LVGKEFVLYS DHEALKYLNS KKRISSDMHA RWCQYLQKFP FRLQHKSGVQ 900 NKVADSLSRR VTLLTTLSSS ILGFEQLKGE YEDDEDFSEI WSKVSNKQPS AGHVGRDKTL 960 EVVKERFYWS HLRRDVCKFV EKCYTCQTSK GQSKNTGLYM PLPVPENIWE DLSMDFVLGL 1020 PRTQRGVGSI FVVVDRFLKM AHFIPCKKTS DAVAIARLFF KEVVPLHGVP KTITSDRDNK 1080 FLSHFWRTLW KIFDSSLNFS STAHPQTDGQ TEAVKRTLGN LVRCLYGEKP KQWDIALPQA 1140 EFAYNNAVHS ATDRTPFSIM YIKAPSQTLD MVKLPKGNGL NVSAKHLAEQ VVEVQQAVKQ 1200 KLEAANQKYK QANDKYRRHE TFEVGDQVRV FLRKERLPVG TYSKLKPKKY GPYTILQKIN 1260 DNAYIVDLPD NMGISKTFNV SDLSKFHDSS VPLYPNSRTS FSQVEETDAD ELGISFMDLW 1320 TIRSPFERAC NVLDFWLEAP VDFEDDEQFQ STVISQSSNQ SPNPVEHDPD AEVVALSPRT 1380 LMATNRYICE VCHKGFQRDQ NLQLHRRGHN LPWKLKQRTT TQVKKRVYVC PEPNCVHHDP 1440 SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HTKICGTREY RCDCGTIFSR 1500 KDSFVTHRAF CDALTEENYR VNHNLGASGG ILQSQAQELF TCDTGSNANT MMNLSISNEN 1560 MDNSPRPLSL TSAGVMISSN LDSIFNPRTS PLAMGSAYTS ATALLQKAAE MGAKISDNTI 1620 APILLRGFTG YSTSGLNSSG AVQEGSSMVG SNMATHATST NNFYVGEETY EKNLEPGDPR 1680 SLNTVPPALF DSHFLHSEEN GNTANLLGEV YMGGSEKMTV DFLGVEPTGH QSISKKRSYD 1740 GNIVNLGYSN GQKSLNHLRS NW

Sequence ? help Back to Top

Protein Sequence Length: 1762 aa Download sequence

MTSGSGSEAG LPKPVDDALR ALEQRWDQRF HEQDVRQRRF ETLLETILER LDTLGIDANN  60
RYDYDRENSD FRLKVDIPNF NGCLGIEEFM DWIAEVDRFF NYLDTPAEKR VKLVACRLKG  120
GASAWWDRLQ SRRVRKGKNL VRTWYRMKFL LQQEFLPPDY EQILFQAYQN LKQGAKSVHE  180
YTADFMRGRI GVQVVRTLSE VKNLVLKAEL MQQERSRRNY DNYRDDGSDD KDKKELTDRK  240
FNNNNRQNYR EEKAVGKRVV AEGGDNKKGD NNPYAKFHGV TCYRYEDDEE DDYDEDDKQI  300
YVVRRMMLTP KSETQTQRHQ LFKTRCTING KVFRLIIDSG SYENIISKEA VRKLNLPVEK  360
HPTPYSLWWI KSESRQLDVT KCCKVPFSIG KYKDEVYCDV VDMDVCQFLL GRPWQYDLDV  420
LHSGKSNQYR FEKNGEKFLL LPMQKSDKSK EQKTFLSVAK DFGSEMKESN ELYALVVKQQ  480
VELQVEEHPD LVQPLLLEFK DIMPDDIPDG LPPMRDIQHH INLIPGARLP NMPHYRMNPK  540
ESEILKEKVE ELLKKGLIRE SMSPCAVPAL LTPKKDGSWR MCVDSSAINR ITVGYKFPIP  600
RPDDMLDRLT GSAWFSKFDL KNGYHQIRIR PGDEWKTAFK TKEGLFEWLV MSFGLSNAPS  660
TFMRLMNQVL KPFPGQFVVV YFDDILIYSN SEEEHLAHLR QVLEVLQQNK LYVNLKKCNF  720
LTRQLLFLGF VVSADGVQVD ESKILAIKDW PEPKNVSELR SFHGLATFYR SFVTLKEKLY  780
TAPVLALPDF DKVFKVDCDA SGVGIGAVLS QEKRPVAFFS EKLSDSTRKW STYDKEFYYV  840
VRALKTWEHY LVGKEFVLYS DHEALKYLNS KKRISSDMHA RWCQYLQKFP FRLQHKSGVQ  900
NKVADSLSRR VTLLTTLSSS ILGFEQLKGE YEDDEDFSEI WSKVSNKQPS AGHVGRDKTL  960
EVVKERFYWS HLRRDVCKFV EKCYTCQTSK GQSKNTGLYM PLPVPENIWE DLSMDFVLGL  1020
PRTQRGVGSI FVVVDRFLKM AHFIPCKKTS DAVAIARLFF KEVVPLHGVP KTITSDRDNK  1080
FLSHFWRTLW KIFDSSLNFS STAHPQTDGQ TEAVKRTLGN LVRCLYGEKP KQWDIALPQA  1140
EFAYNNAVHS ATDRTPFSIM YIKAPSQTLD MVKLPKGNGL NVSAKHLAEQ VVEVQQAVKQ  1200
KLEAANQKYK QANDKYRRHE TFEVGDQVRV FLRKERLPVG TYSKLKPKKY GPYTILQKIN  1260
DNAYIVDLPD NMGISKTFNV SDLSKFHDSS VPLYPNSRTS FSQVEETDAD ELGISFMDLW  1320
TIRSPFERAC NVLDFWLEAP VDFEDDEQFQ STVISQSSNQ SPNPVEHDPD AEVVALSPRT  1380
LMATNRYICE VCHKGFQRDQ NLQLHRRGHN LPWKLKQRTT TQVKKRVYVC PEPNCVHHDP  1440
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HTKICGTREY RCDCGTIFSR  1500
KDSFVTHRAF CDALTEENYR VNHNLGASGG ILQSQAQELF TCDTGSNANT MMNLSISNEN  1560
MDNSPRPLSL TSAGVMISSN LDSIFNPRTS PLAMGSAYTS ATALLQKAAE MGAKISDNTI  1620
APILLRGFTG YSTSGLNSSG AVQEGSSMVG SNMATHATST NNFYVGEETY EKNLEPGDPR  1680
SLNTVPPALF DSHFLHSEEN GNTANLLGEV YMGGSEKMTV DFLGVEPTGH QSISKKRSYD  1740
GNIVNLGYSN GQKSLNHLRS NW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	138	RRVRKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	3e-98	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO94198