PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO94465

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 295aa MW: 33050.3 Da PI: 7.882

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO94465	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.3e-06	137	156	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ OMO94465 137 FSCHVCFKTFNRYNNLQMHM 156 89*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MEPSDISYDS DLVYNSSTNY QTDHDHDHIE PLDLFPGAMQ NSLDQPMPLL SCFLGSSQST 60 TTLVDHQNPK ACSHIEGDKE DVTVALHIGL PDIHPSAGSS SSNINPNSKE NNVNGGPTAK 120 QYWIPTPEQI LIGFTHFSCH VCFKTFNRYN NLQMHMWGHG SQYRKGPDSL KGTQPRAMLG 180 IPCYCCAEGC KNNIQHPRAK PLKDFRTLQT HYKRKHGVKP FMCRKCGKFL AVKGDWRTHE 240 KNCGKRWLCV CGSDFKHKRS LKDHIKAFGS GHAPFPPSFD GVELLDEDTA SSLHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-116	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO94465