PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO94756
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LFY
Protein Properties Length: 396aa    MW: 44091.8 Da    PI: 7.311
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO94756genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY636.25.1e-19413801386
   FLO_LFY   1 mdpeafsas.lfkwdpraaaaapparlleeaavseapleaaaaaaark.lr......eleelfkayGvryltvakiaelGftvstLvdmkdeelddlmksl 93 
               mdpeaf++  +fkwdpr ++a++parl+e  ++++++++aaa+aaa+   r      ++eelf+ayG+rylt+akiaelGftvstL++mk+eel+++m+s+
  OMO94756   1 MDPEAFTTGsFFKWDPRGVVAPTPARLMEAVVAPQPQTAAAAVAAAYLgSRpprelgGIEELFHAYGIRYLTAAKIAELGFTVSTLLGMKEEELEEMMNSV 101
               9****987559*********99999999888777777555555555543448888889******************************************* PP

   FLO_LFY  94 seifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqk 194
               s+ifr++llvGeryGikaavraerrrleee+   +rr+l+s d+++aldalsqeglseepvq+ekeaagsgg+g  +++lv+a+  +  +++k     kq+
  OMO94756 102 SQIFRWELLVGERYGIKAAVRAERRRLEEED--LRRRHLVSGDTTNALDALSQEGLSEEPVQQEKEAAGSGGGG--TWDLVVAAGGR--NNNK-----KQR 191
               *****************************88..89999********************************9999..99999887422..1222.....333 PP

   FLO_LFY 195 rkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagas 295
               r+k ++ +   d++++ e  edee++  +  erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq++akerGekcP+kvtnqvfryakkagas
  OMO94756 192 RRKGQK-V--VDHEDDMEGGEDEENGDGGCYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNMAKERGEKCPSKVTNQVFRYAKKAGAS 289
               333333.2..333444444444555555568********************************************************************** PP

   FLO_LFY 296 yinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
               yinkPkmrhYvhCYalhcLde asnalrrafkergenvGawrqacykplvaiaarqgwdida+fnahprL+iWYvPtkLrqLCh+er++a+
  OMO94756 290 YINKPKMRHYVHCYALHCLDEAASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSAA 380
               ***************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MDPEAFTTGS FFKWDPRGVV APTPARLMEA VVAPQPQTAA AAVAAAYLGS RPPRELGGIE  60
ELFHAYGIRY LTAAKIAELG FTVSTLLGMK EEELEEMMNS VSQIFRWELL VGERYGIKAA  120
VRAERRRLEE EDLRRRHLVS GDTTNALDAL SQEGLSEEPV QQEKEAAGSG GGGTWDLVVA  180
AGGRNNNKKQ RRRKGQKVVD HEDDMEGGED EENGDGGCYE RQREHPFIVT EPGEVARGKK  240
NGLDYLFHLY EQCREFLIQV QNMAKERGEK CPSKVTNQVF RYAKKAGASY INKPKMRHYV  300
HCYALHCLDE AASNALRRAF KERGENVGAW RQACYKPLVA IAARQGWDID AIFNAHPRLA  360
IWYVPTKLRQ LCHAERNSAA AATSSSVSAG PDHIAF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-141LFY family protein