PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO94762
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 209aa    MW: 23424.6 Da    PI: 9.4692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO94762genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-201362255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
              +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  OMO94762 13 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 62
              7********.**********94....45***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MFDELLGNVR RRHYRGVRQR PWGKWAAEIR DPKKAARVWL GTFETAEAAA LAYDEAALRF  60
KGSKAKLNFP ERVQARSEFG YLTTRHHQLE RAPAPPAANL PPPPAPPPTN SQLPTYPNIS  120
QYAQLLSGGN NNNAGLNYAI FPDGYGGYNY TSSNTTSLSS SSSSTTSHSH SQHQQQEDYL  180
GGFSLQFGGS SSPENRRDYH DYYYYSRDQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-22ERF family protein