PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO94802
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 321aa    MW: 35432.3 Da    PI: 10.6479
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO94802genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.7e-1494139247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++++ ++lG+g+W+ I++   ++Rt+ q+ s+ qky
         OMO94802  94 KPWTEEEHRVFLEGLRKLGKGDWRGISKNYVTTRTPTQVASHAQKY 139
                      58*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MVKEAGRKCS HCGHNGHNSR TCNGKGCVKL FGVNISPMDK QQNFMKKSSS MGNLPSHADS  60
NNASSPVEDD HGYLSDGQIH SRKHKAAHER RRGKPWTEEE HRVFLEGLRK LGKGDWRGIS  120
KNYVTTRTPT QVASHAQKYF LRQAGNDKKK RRPSLFDMAF KEAKISTASP PGSPSASEIS  180
RKILSDNNHD QVKAPSQILN RFPHLCLDDR PPVMSMTASP RFPSYYQGIN INPSMAGVAL  240
NGQGFPGAKI MNPSMPFLHT MNYAGPRYGY IPKTLGSVVA CAPIAHHHPS GIPLPRKRSF  300
GAQDWASSIA KRYKPSISGI H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KKKRR
2148153KKKRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-67MYB_related family protein