PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO94862

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 281aa MW: 30955 Da PI: 5.2563

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO94862	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F+++ L H +H OMO94862 166 YKCETCKKVFKSHQALGGHRASH 188 9***************9999888 PP
2	zf-C2H2	11.9	0.00069	215	237	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C+k+F + L H ++H OMO94862 215 FKCPFCDKVFQSGQALGGHKKVH 237 89********9999999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MGGHMRSHLA KLPLPPKPKP IDKSPSPYSS LTEVNNHRST EDIESAAKNP TGRRSKRPRK 60 LPLVVGSPSD SVSSVVLASE DENSLSDEDA ARCLIMLSRD SWTRKQEKKE SYDFDDDHEF 120 IIDGDGVFVG AEEDGYYLKE EEEDEDDDDE SFCVTNYHSA KAHAKYKCET CKKVFKSHQA 180 LGGHRASHKN KPMILNEGGV EDGGDGGGGH QQRIFKCPFC DKVFQSGQAL GGHKKVHFTY 240 LAVPEKVSNE FESSSSSSAV QSFDLNLPAP EYHDGGGGDE Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	4e-26	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO94862