PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO94873
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 196aa    MW: 22042.6 Da    PI: 8.204
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO94873genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-173887255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a  +++g
  OMO94873 38 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVASMAIKG 87
              69****998.**********843...6*******************99877765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MDLKYIKQSL GKKISKKSAK GSTDQDDFKK GKALRHPTYR GVRMRSWGKW VSEIREPRKK  60
SRIWLGTFPT AEMAARAHDV ASMAIKGSSA YLNFPESAHE LPRPATSSRR DIQEAANKAA  120
YAMTESPCST TTMSCETQGS PSSQSVDSDQ SMWFDLPDLS LEADSSQRFG YNSSSWWQQA  180
EIDTDIPFDE TLTPWD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-47ERF family protein