PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO94986
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 113aa    MW: 13362.5 Da    PI: 10.4091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO94986genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-181095283
              EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
        B3  2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83
              f +++++   +++rlv+p + + ++    +    ++ +++  d +g++W++++i r+ +++    ++++GW +Fv++n L++gD+++Fk
  OMO94986 10 FRKMVRPTEITNHRLVVPTEAMWAFllkvD---SNKLDIQALDVNGKTWNFRYITRRPGSHhpqPYFSRGWMKFVRDNSLQAGDTIIFK 95
              57899999*****************97432...45569***************7644443368889**********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    
MEEEKSLEIF RKMVRPTEIT NHRLVVPTEA MWAFLLKVDS NKLDIQALDV NGKTWNFRYI  60
TRRPGSHHPQ PYFSRGWMKF VRDNSLQAGD TIIFKIRPLN DPIFFIEVAV KKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.13e-12RAV family protein