PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO94998
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 120aa    MW: 13994.4 Da    PI: 10.6653
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO94998genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.5e-13594189
              EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
        B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrse 89
              f k+l++ dv k+  l +p + ++++  ++ + s+    ed +sgr W+++++   + ++     +++kGW +Fvk ++L++gD v+F+ ++ + 
  OMO94998  5 FTKQLSKTDVEKR--LAIPTSSLRAFnLNVDAYSVGFEAEDmKSGRIWQFQCT--TRTKGfyskPIISKGWVQFVKFKQLRVGDRVTFYKSN-EH 94
              8999*88888875..9********997444456777888888999*******4..3333323457788*********************443.33 PP
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    
MKLLFTKQLS KTDVEKRLAI PTSSLRAFNL NVDAYSVGFE AEDMKSGRIW QFQCTTRTKG  60
FYSKPIISKG WVQFVKFKQL RVGDRVTFYK SNEHNEAQVP YKVEVERKLK LLGKLVWAKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-08RAV family protein