PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO95278
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YC
Protein Properties Length: 253aa    MW: 28178.7 Da    PI: 5.9341
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO95278genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.56.4e-56781811101
     NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
               ql+ fwe+q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivpr
  OMO95278  78 QLQRFWENQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 178
               89******9999***************************************************************************************** PP

     NF-YC  99 del 101
               ++l
  OMO95278 179 EDL 181
               987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MDQQGHGQNS AMGAVGSAGS VPYAVTTYQP NQMMGSSAPG SIQSPTQPAG LPASSAQLTH  60
QLAYQHIQQQ QQQQLQQQLQ RFWENQYQEI EQTTDFKNHS LPLARIKKIM KADEDVRMIS  120
AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRED  180
LKDEVLASVP RVGGPTEGLP YYYMPPQLAP QVGAPGMTVG KPVMDHALYG QQSRPYGGQQ  240
MWPSQQQQPP SDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.34e-84NF-YC family protein